國家衛生健康委員會等6部門聯合制定
| 序號 | 疾病名稱(中文) | 疾病名稱(英文) | 
| 1 | 軟骨發育不全 | Achondroplasia | 
| 2 | 獲得性血友病 | Acquired hemophilia | 
| 3 | 肢端肥大症 | Acromegaly | 
| 4 | 成人斯蒂爾病 | Adult-onset Still disease | 
| 5 | 阿拉基綜合徵 | Alagille syndrome | 
| 6 | α-1–抗胰蛋白酶缺乏症 | Alpha-1-antitrypsin deficiency | 
| 7 | ANCA相關性血管炎 | ANCA-associated vasculitis | 
| 8 | 巴爾得──別德爾綜合徵 | Bardet-Biedl syndrome | 
| 9 | 白塞病/貝赫切特綜合徵 | Behçet’s disease | 
| 10 | 藍色橡皮皰樣痣 | Blue rubber bleb nevus | 
| 11 | CDKL5缺乏症 | CDKL5-deficiency disorder | 
| 12 | 無脈絡膜症 | Choroideremia | 
| 13 | 慢性炎性脫髓鞘性多發性神經根神經病 | Chronic inflammatory demyelinating polyneuropathy | 
| 14 | 腎透明細胞肉瘤 | Clear cell sarcoma of kidney | 
| 15 | 冷凝集素病 | Cold agglutinin disease | 
| 16 | 先天性膽道閉鎖 | Congenital biliary atresia | 
| 17 | 先天性凝血因數VII缺乏症 | Congenital factor VII deficiency | 
| 18 | 冷吡啉(冷炎素)相關週期性綜合徵/ NLRP3相關自身炎症性疾病 | Cryopyrin-associated periodic syndrome/ NLRP3-associated systemic autoinflammatory disease | 
| 19 | 皮膚神經內分泌癌(梅克爾細胞癌) | Cutaneous neuroendocrine carcinoma(Merkel cell carcinoma) | 
| 20 | 皮膚T細胞淋巴瘤 | Cutaneous T-cell lymphomas | 
| 21 | 胱氨酸貯積症 | Cystinosis | 
| 22 | 隆突性皮膚纖維肉瘤 | Dermatofibrosarcoma protuberans | 
| 23 | 嗜酸性粒細胞性胃腸炎 | Eosinophilic gastroenteritis | 
| 24 | 上皮樣肉瘤 | Epithelioid sarcoma | 
| 25 | 面肩肱型肌營養不良症 | Facioscapulohumeral muscular dystrophy | 
| 26 | 家族性噬血細胞淋巴組織細胞增生症 | Familial hemophagocytic lymphohistiocytosis | 
| 27 | 家族性腺瘤性息肉病 | Familial adenomatous polyposis | 
| 28 | 進行性骨化性纖維發育不良 | Fibrodysplasia ossificans progressiva | 
| 29 | 脆性X綜合徵 | Fragile X syndrome | 
| 30 | 神經節苷脂貯積症 | Gangliosidosis | 
| 31 | 胃腸胰神經內分泌腫瘤 | Gastroenteropancreatic neuroendocrine neoplasm | 
| 32 | 胃腸間質瘤 | Gastrointestinal stromal tumor | 
| 33 | 泛發性膿皰型銀屑病 | Generalized pustular psoriasis | 
| 34 | 遺傳性甲狀旁腺功能減退症 | Genetic hypoparathyroidism | 
| 35 | 巨細胞動脈炎 | Giant cell arteritis | 
| 36 | 骨巨細胞瘤 | Giant cell tumor of bone | 
| 37 | 血小板無力症 | Glanzmann thrombasthenia | 
| 38 | 膠質母細胞瘤 | Glioblastoma | 
| 39 | 高林綜合徵 | Gorlin syndrome | 
| 40 | 化膿性汗腺炎 | Hidradenitis suppurativa | 
| 41 | 早老症 | Hutchinson-Gilford progeria syndrome | 
| 42 | 炎性肌纖維母細胞瘤 | Inflammatory myofibroblastic tumor | 
| 43 | 萊伯氏先天性黑矇症 | Leber congenital amaurosis | 
| 44 | 倫諾克斯──加斯托綜合徵 | Lennox-Gastaut syndrome | 
| 45 | 角膜緣幹細胞缺乏症 | Limbal stem cell deficiency | 
| 46 | 惡性高熱 | Malignant hyperthermia | 
| 47 | 惡性胸膜間皮瘤 | Malignant pleural mesothelioma | 
| 48 | 黑色素瘤 | Melanoma | 
| 49 | 異染性腦白質營養不良 | Metachromatic leukodystrophy | 
| 50 | 單基因非綜合徵性肥胖 | Monogenic non-syndromic obesity | 
| 51 | 多發性內分泌腺瘤病 | Multiple endocrine neoplasia | 
| 52 | 發作性睡病 | Narcolepsy | 
| 53 | 神經母細胞瘤 | Neuroblastoma | 
| 54 | 神經纖維瘤病 | Neurofibromatosis | 
| 55 | 神經元蠟樣脂褐質沉積症 | Neuronal ceroid lipofuscinosis | 
| 56 | 神經營養性角膜炎 | Neurotrophic keratitis | 
| 57 | 骨肉瘤 | Osteosarcoma | 
| 58 | 天皰瘡 | Pemphigus | 
| 59 | 新生兒持續肺動脈高壓 | Persistent pulmonary hypertension of the newborn | 
| 60 | 嗜鉻細胞瘤 | Pheochromocytoma | 
| 61 | PIK3CA相關過度生長綜合徵 | PIK3CA-related overgrowth syndrome | 
| 62 | 真性紅細胞增多症 | Polycythaemia vera | 
| 63 | 原發性膽汁性膽管炎 | Primary biliary cholangitis | 
| 64 | 原發性生長激素缺乏症 | Primary growth hormone deficiency | 
| 65 | 原發性胰島素樣生長因子-1缺乏症 | Primary IGF1 deficiency | 
| 66 | 原發性免疫缺陷 | Primary immunodeficiency | 
| 67 | 原發性骨髓纖維化 | Primary myelofibrosis | 
| 68 | 原發性硬化性膽管炎 | Primary sclerosing cholangitis | 
| 69 | 進行性纖維化性間質性肺疾病 | Progressive fibrosing interstitial lung disease | 
| 70 | 復發性心包炎 | Recurrent pericarditis | 
| 71 | 早產兒視網膜病 | Retinopathy of prematurity | 
| 72 | 雷特氏綜合徵 | Rett syndrome | 
| 73 | 短腸綜合徵 | Short bowel syndrome | 
| 74 | 全身型幼年特發性關節炎 | Systemic juvenile idiopathic arthritis | 
| 75 | 系統性肥大細胞增多症 | Systemic mastocytosis | 
| 76 | 大動脈炎/多發性大動脈炎 | Takayasu arteritis | 
| 77 | 腱鞘巨細胞瘤/色素沉著絨毛結節性滑膜炎 | Tenosynovial giant cell tumor/Pigmented villonodular synovitis | 
| 78 | 地中海貧血(重型) | Thalassemia major | 
| 79 | 血栓性血小板減少性紫癜 | Thrombotic thrombocytopenic purpura | 
| 80 | 轉甲狀腺素蛋白澱粉樣變性 | Transthyretin amyloidosis | 
| 81 | 腫瘤壞死因子受體相關週期性綜合徵 | West syndrome/Infantile spasms syndrome | 
| 82 | 腫瘤相關骨軟化症 | Tumor-induced osteomalacia | 
| 83 | Tumor necrosis factor receptor-associated periodic syndrome | Von Hippel-Lindau syndrome | 
| 84 | 血管性血友病Ⅲ型 | Von Willebrand disease type3 | 
| 85 | 華氏巨球蛋白血症/淋巴漿細胞淋巴瘤 | Waldenström macroglobulinemia/ Lymphoplasmacytic lymphoma | 
| 86 | 韋斯特綜合徵/嬰兒痙攣綜合徵 | West syndrome/Infantile spasms syndrom | 
(2023年9月20日)
 
						 
							 
			 
			 
			 
			




